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The Institute of Bio- and Geosciences - Computational Metagenomics (IBG-5) focuses on bio- and chemoinformatics research activities with a particular emphasis on the interdisciplinary decoding and analysis of mass spectrometry data in the fields of lipidomics and metabolomics. The focus is on the use of cloud technologies, algorithms and AI to analyze large amounts of data and to support various applications in the life sciences and biomedicine. The IBG-5 is involved in service and infrastructure networks both nationally (as part of the German Network for Bioinformatics Infrastructure - de.NBI) and internationally (as a German node in the European Bioinformatics Network ELIXIR) to make data analysis more efficient and automated for both the scientific community and the end user.
Your Job:
- Work on and development of a broad spectrum of methods and applications of lipidomics and metabolomics and cloud computing.
- Processing, analysis, integration and interpretation of lipidomic and metabolomic data from various MS platforms (targeted and untargeted, IMS) as part of various collaborative projects (genomics, metagenomics, clinical research).
- Development of analysis workflows using container and cloud technologies (e.g. Docker, Apptainer, S3, Openstack, Ansible).
- Collaboration in the field of human data in national and European scientific networks (e.g. de.NBI, ELIXIR Europe). The focus is on the integration and analysis of human data to promote collaboration and data exchange between research institutions.
- Support in the planning, development and operation of Trusted Research Environments in the context of clinical research.
- Supporting and advising de.NBI Cloud Governance on applications to use the de.NBI Cloud to process sensitive data.
- Support the ELIXIR Germany department in administrative project work such as writing proposals and reports and participating in project meetings.
- Supporting the ELIXIR Germany department in the planning and implementation of training courses for scientists at different career levels and from different disciplines.
- Exchange with internal and external project partners at IBG-5, the research center, Bielefeld University and other national and international partners.
- Publication of scientific results in international journals and presentation at conferences.
- (Co)-supervision of doctoral students.
Your Profile:
- A completed scientific university degree and doctorate (PhD) in the field of bioinformatics, computer science, mathematics, engineering or natural sciences, or a related degree program.
- Experience in the development and execution of big data analyses in connection with cloud technologies and workflows.
- Very good knowledge in the analysis of metabolome and / or lipidome data from mass spectrometry, common open source software, as well as approaches for data integration of multi-omics data.
- Good knowledge and experience in handling human data
- Very good programming skills (e.g. in Python or comparable) and knowledge of relevant technologies (e.g. Git, Docker, Nextflow)
- Very proficient working with Linux/Unix
- Fluency in written and spoken English
- High degree of independence and willingness to familiarize yourself with complex topics
- Very reliable and conscientious working style
- Good publication record
- Willingness to actively impart knowledge, e.g. by supporting the planning and implementation of training courses
- Willingness to travel and participate in conferences, networking events and project meetings
Our Offer:
We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! We support you in your work with:
- Comprehensive training courses and individual opportunities for personal and professional further development
- Extensive company health management
- Ideal conditions for balancing work and private life, as well as a family-friendly corporate policy
- Flexible work (location) arrangements, e.g. remote work
- Targeted services for international employees, e.g. through our International Advisory Service
In addition to exciting tasks and a collaborative working atmosphere at Jülich, we have a lot more to offer:
https://go.fzj.de/benefits
We offer you an exciting and varied role in an international and interdisciplinary working environment. The position is for a fixed term of 3 years, with possible long-term prospects. Salary and social security benefits will conform to the provisions of the Collective Agreement for the Public Service (TVöD-Bund), pay group 13 - 14, depending on your current qualifications and the precise nature of the tasks assigned to you. All information about the Collective Agreement for the Public Service (TVöD-Bund) can be found on the BMI website: https://go.fzj.de/bmi.tvoed The monthly salaries in euros can be found on page 66 of the PDF download.
Place of employment: Bielefeld
We welcome applications from people with diverse backgrounds, e.g. in terms of age, gender, disability, sexual orientation / identity, and social, ethnic and religious origin. A diverse and inclusive working environment with equal opportunities in which everyone can realize their potential is important to us.
Please see the offical announcement for more details:
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We are announcing a position as doctoral student (m/f/d) in the field of bioinformatics and computer science. The position (65%) is limited for a time period of three years.
The Research Center Borstel (RCB) is an internationally operating Lung Center within the Leibniz Association, financed by the Federal Government and the State of Schleswig-Holstein. Our central task is basic and translational research in the field of respiratory diseases. We operate extensive laboratory and research infrastructures. Academically, we are closely linked with neighboring universities (Lübeck, Kiel) and clinically with the University Hospital Schleswig-Holstein. Our goal is to improve existing methods for the detection, prevention and treatment of lung diseases and to develop new, innovative therapeutic approaches.
Job Description
The project is dedicated towards further development of informatics tools for lipidomics research in the frame work of the Lipidomics Informatics for Life Sciences (LIFS – https://lifs-tools.org). The applicant is responsible for the implementation and maintenance of software solutions provided by the consortia with a focus on lipidomics data post processing and will support teaching activities within the German Network for Bioinformatics (de.NBI). The doctoral project will focus on the integration of ion mobility in automated lipid identification as well as implementation of data quality metrics on basis of the LipidXplorer platform.
Your Qualification
- MSc, BSc in informatics, bioinformatics or computer sciences
- Experience in programming Python, R and Shiny
- Experience multivariate data analysis and statistics
- Experience in cheminformatics would be beneficial
- Good communication skills in spoken and written English language
Our Offer
- Your new job is hosted in a top class research centre close to Hamburg
- Participation in a productive and active research group
- Interdisciplinary research in the biomedical field with focus on lipid metabolism in lung health and infectious diseases
- Payment according to TVöD-VKA incl. all benefits usually offered in the public sector
- Family-friendly working conditions and flexible working hours as well as home office arrangements
- Childcare centre and workplace health promotion
The FZB is certified for the "berufundfamilie" audit and specifically promotes the compatibility of career and family. The under- represented gender is given special consideration while maintaining the same professional and personal aptitude. Severely handicapped persons with otherwise equal aptitude are also given preferential consideration. For more information about our certifications, please visit our homepage. If you have any questions, please do not hesitate to contact PD Dr. D. Schwudke via dschwudke@fz-borstel.
Please send your application with the usual documents (without photo) up to 15.2.2024 to our website www.fz-borstel.de.
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September 1-3, 2024, Research Center Borstel – Leibniz Lung Center, Borstel, Germany
We cordially invite you to join us for the 9th edition of the Lipidomics Forum conference in Borstel, Germany.
The main focus of the conference will be on the Role of Lipids in Infectious Diseases and Host-Pathogen Interaction.
More information: Please see the website for key dates and more information
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- Category: News
University Assistant (“post doc”) at the Department for Analytical Chemistry
is vacant.
Identification number of advertisement: P20231
The lab of Lipidomics in Metabolisms and Signaling (https://lipidomics.at/) is located in the heart of Vienna at the Institute of Analytical Chemistry, University of Vienna. Besides scientific activities in developing new and improved measuring methods and analytical separation techniques, extensive research is ongoing in biomedical and preclinical research and the development of bioanalytical tools. We invite applications for a Post-doctoral position / Scientist (m/f) in bioinformatics. The lab seeks a talented and highly motivated computational scientist to pursue bioinformatics projects in collaboration with the German Network for Bioinformatics-Infrastructure (de.NBI) DIGIomics-4AUT and the International Lipidomics Society on databases and resources for lipidomics research. The successful candidate will work within interdisciplinary teams (clinical, biostatistics, analytical, and bioinformatics scientists) and will streamline data analysis and integration across various application domains. Regular publication and presentation of scientific and methodological results is expected.
Extent of Employment: 40.0 hours/week
Occupation group in accordance with collective bargaining agreement: §48 VwGr. B1 lit. b (postdoc)
On top of this, relevant chargeable work experience determines the assessment of a particular salary grade.
We offer a 3-year contract.
Areas of work:
- Active participation in research, teaching, and administration
- Developing and strengthening the independent research profile
- Development and maintenance of lipidomics databases
- Development and maintenance of bioanalysis tools for lipidomics
- Involvement in research projects / research studies
- International publications and presentations
- Responsibility for project applications and the acquisition of third-party funding
- Supervision of students
- Participation in evaluation measures and quality assurance
- Involvement in the department administration as well as in teaching and research administration
Profile:
- Ph.D. in bioinformatics, biostatistics, computational biology, or similar, with a strong publication record
- A solid understanding of the relevant concepts in mass spectrometry-based lipidomics and/or metabolomics
- Enthusiasm for learning more
- Broad experience in software development and maintenance of the bioinformatics infrastructure
- A solid understanding of the statistical principles behind current best practices in the field
- Strong experience in the use of programming languages such as JAVA, C++, R, or Python
- Substantiated knowledge in efficient algorithms and data structures
- Strong communication, data presentation, and visualization skills. Thereby English is required
- Ability to work both independently and collaboratively and to handle several concurrent, fast-paced projects
In addition, we expect the candidate to have:
- Experience of working on research projects
- Publications in renowned, subject-relevant media (peer-reviewed, depending on the professional standards)
- International presentation experience
Desirable qualifications are:
- Knowledge of university processes and structures
- Experience abroad
- Experience of supervising students
- Ability to present complex results in a clear and concise manner for audience inside and outside the bioinformatics domain
Application documents
- Letter of motivation
- Academic curriculum vitae (including a list of publications, a list of courses and a list of talks given)
- Description of research interests (short)
- Methodological competencies description
- Certificates
- Contact details of at least two people who could provide a letter of reference
Applications, including a letter of motivation (German or English) should be sent no later than 15th of June 2023 and be referenced to the identification number P20231
For further information, please
The University pursues a non-discriminatory employment policy and values equal opportunities as well as diversity (http://diversity.univie.ac.at/). The University specializes in increasing the number of women in senior and academic positions. Given equal qualifications, preference will be given to female applicants.
Human Resources and Gender Equality of the University of Vienna
ID of advertisement: P20231
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- Category: News
We are announcing a position as Computer Scientist (m/f/d). The position (65%) is limited for a time period of one year and can be filled immediately.
The Borstel Research Center is an internationally renowned research institute, financed by the Federal Government and the State of Schleswig-Holstein. Our central task is research and patient care in the field of respiratory diseases. We operate both basic research infrastructures and a medical clinic. Our goal is to improve existing methods for the detection, prevention and treatment of lung diseases and to develop new, innovative therapeutic approaches.
Job Description
The project is dedicated towards further development of informatics tools for lipidomics research in the frame work of the Lipidomics Informatics for Life Sciences (LIFS – https://lifs-tools.org). The applicant is responsible for the implementation and maintenance of software solutions provided by the consortia with a focus on systematic lipidome comparisons. The applicant will further support the implementation of a lipidome resource by supporting data curation and customize the LIFS workflow.
Your Qualification
- MSc, BSc in informatics, bioinformatics or computer sciences
- Experience in programming Python, R and Shiny
- Experience multivariate data analysis and statistics
- Experience in cheminformatics would be beneficial
- Good communication skills in spoken and written English language
Our Offer
- Your new job is hosted in a top class research centre close to Hamburg
- Personal atmosphere and support
- Payment according to TVöD-VKA incl. all benefits usually offered in the public sector
- Family-friendly working conditions and flexible working hours as well as home office arrangements
- Childcare centre and workplace health promotion
- Possibility to start doctoral studies in cooperation with Prof. Andrew Torda (Universität Hamburg)
