LipidXplorer From Command Line

LipidXplorer From Command Line

One way to run LipidXplorer from the command line is using a LipidXplorer-project file,

1. Generate a Project file

   In the menu bar go to Project:  
   Save as ... - to store a new project file  
   Save - to re-write the current project file

1. Edit or update the *.lxp project file

   the file contains all the configuration setting for LipidXlorerer  
   including the location of the masterScan and the MFQLs

1. Generate the MasterScan with lximport.py

   run: python lximport.py -p <your/project/file.lxp>
   this will generate the masterScan as specified in the project file

1. Generate results with lxrun.py

   run: python lxrun.py -p <your/project/file.lxp>
   this will run the MFQL queries on the masterScan and generate the results