View source for LipidXplorer From Command Line


== LipidXplorer From Command Line ==

One way to run LipidXplorer from the command line is using a LipidXplorer-project file,  

# Generate a Project file  
    In the menu bar go to ''Project'':  
    ''Save as'' ... - to store a new project file  
    ''Save'' - to re-write the current project file

# Edit or update the *.lxp project file
    the file contains all the configuration setting for LipidXlorerer  
    including the location of the masterScan and the MFQLs

# Generate the MasterScan with lximport.py
    run: ''python lximport.py -p <your/project/file.lxp>''
    this will generate the masterScan as specified in the project file
# Generate results with lxrun.py
    run: ''python lxrun.py -p <your/project/file.lxp>''
    this will run the MFQL queries on the masterScan and generate the results