Main Page - Revision history

Jacobo.miranda: /* 2016-05-09 New release: LipidXplorer Version 1.2.7 */

2020-07-22T15:27:12Z

2016-05-09 New release: LipidXplorer Version 1.2.7

Nils.hoffmann: /* 2020-02-10 New LipidXplorer releases now tracked by Zenodo */

2020-02-10T08:55:08Z

2020-02-10 New LipidXplorer releases now tracked by Zenodo

Nils.hoffmann: /* News */

2020-02-10T08:54:21Z

News

Nils.hoffmann: /* Citing LipidXplorer */

2019-12-13T13:30:26Z

Citing LipidXplorer

Nils.hoffmann: /* Citing LipidXplorer */

2019-10-13T09:58:36Z

Citing LipidXplorer

Nils.hoffmann: /* Get LipidXplorer */

2019-10-13T09:56:51Z

Get LipidXplorer

Nils.hoffmann: /* Get LipidXplorer */

2019-10-13T08:59:28Z

Get LipidXplorer

Nils.hoffmann: /* 2019-10-14 New release: LipidXplorer Version 1.2.8 */

2019-10-13T08:51:17Z

2019-10-14 New release: LipidXplorer Version 1.2.8

Nils.hoffmann at 08:49, 13 October 2019

2019-10-13T08:49:49Z

Nils.hoffmann at 11:44, 21 August 2019

2019-08-21T11:44:32Z

← Older revision		Revision as of 15:27, 22 July 2020
Line 68:		Line 68:
	====2016-05-09 New release: LipidXplorer Version 1.2.7====		====2016-05-09 New release: LipidXplorer Version 1.2.7====

−	The new version [https://cloud.mpi-cbg.de/index.php/s/Z5slSEynLpiO8LC Single file installer][~~http~~://~~sourceforge~~.~~net~~/~~projects~~/lipidxplorer~~/files/LipidXplorer-1.2.7.zip/download~~ LipidXplorer v1.2.7 source code] can now be downloaded. It includes some minor bug fixes and some speed improvements for MFQL lipid identification.	+	The new version [https://cloud.mpi-cbg.de/index.php/s/Z5slSEynLpiO8LC Single file installer][https://gitlab.isas.de/lifs-public/lipidxplorer LipidXplorer v1.2.8 source code] can now be downloaded. It includes some minor bug fixes and some speed improvements for MFQL lipid identification.

@@ Line 27: / Line 27: @@
 <p class="alert alert-info"><strong>Citing LipidXplorer</strong><br />
-If you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release now has a citable [https://zenodo.org/search?page=1&amp;size=20&amp;q=lipidxplorer DOI for LipidXplorer@Zenodo]
+If you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release now has a citable [https://doi.org/10.5281/zenodo.3483976 DOI for LipidXplorer@Zenodo]
 <br />
 Please reference LipidXplorer in general by citing the following publications:<br />

← Older revision		Revision as of 08:54, 10 February 2020
Line 24:		Line 24:

	=== [[LipidXNews\|News]] ===		=== [[LipidXNews\|News]] ===
		+	====2020-02-10 New LipidXplorer releases now tracked by Zenodo====
		+
		+	<p class="alert alert-info"><strong>Citing LipidXplorer</strong><br />
		+	If you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release now has a citable [https://zenodo.org/search?page=1&size=20&q=lipidxplorer DOI for LipidXplorer@Zenodo]
		+	<br />
		+	Please reference LipidXplorer in general by citing the following publications:<br />
		+	<em>Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, et al. (2012) LipidXplorer: A Software for Consensual Cross-Platform Lipidomics. PLoS ONE 7(1): e29851.</em> [https://doi.org/10.1371/journal.pone.0029851 doi:19.1371/journal.pone]<br />
		+	<em>Herzog R, Schwudke D, Schuhmann K, Sampaio JL, Bornstein SR, Schroeder M, Shevchenko A (2011) A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol. 2011;12(1):R8.</em> [https://doi.org/10.1186/gb-2011-12-1-r8 doi:10.1186/gb-2011-12-1-r8]<br />
		+	<br />
		+	</p>
		+
		+
		+
	<div id="small">		<div id="small">

@@ Line 84: / Line 84: @@
 ===Citing LipidXplorer===
-If you use LipidXplorer, please cite the original LipidXplorer publication:
+If you use LipidXplorer, please cite the original LipidXplorer publications:
 Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, ''et al.'' (2012) '''LipidXplorer: A Software for Consensual Cross-Platform Lipidomics'''. PLoS ONE 7(1): e29851. https://doi.org/10.1371/journal.pone.0029851
 Additionally, if you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release has a citable DOI for [https://zenodo.org/search?page=1&size=20&q=LipidXplorer LipidXplorer@Zenodo].

@@ Line 88: / Line 88: @@
 Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, ''et al.'' (2012) '''LipidXplorer: A Software for Consensual Cross-Platform Lipidomics'''. PLoS ONE 7(1): e29851. https://doi.org/10.1371/journal.pone.0029851
-Additionally, if you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release has a citable DOI for [https://doi.org/10.5281/zenodo.3483977 LipidXplorer@Zenodo].
+Additionally, if you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release has a citable DOI for [https://zenodo.org/search?page=1&size=20&q=LipidXplorer LipidXplorer@Zenodo].
 </div>

← Older revision		Revision as of 09:56, 13 October 2019
Line 83:		Line 83:
	LipidXplorer is published under GPL and available here: [[https://gitlab.isas.de/lifs-public/lipidxplorer LipidXplorer GitLab@ISAS]]. Check out [[LipidXplorer Installation \| the LipidXplorer installation instructions]] for help.		LipidXplorer is published under GPL and available here: [[https://gitlab.isas.de/lifs-public/lipidxplorer LipidXplorer GitLab@ISAS]]. Check out [[LipidXplorer Installation \| the LipidXplorer installation instructions]] for help.

		+	===Citing LipidXplorer===
		+	If you use LipidXplorer, please cite the original LipidXplorer publication:

		+	Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, ''et al.'' (2012) '''LipidXplorer: A Software for Consensual Cross-Platform Lipidomics'''. PLoS ONE 7(1): e29851. https://doi.org/10.1371/journal.pone.0029851
		+
		+	Additionally, if you are using a particular version of LipidXplorer, from version 1.2.8 onwards, each release has a citable DOI for [https://doi.org/10.5281/zenodo.3483977 LipidXplorer@Zenodo].

	</div>		</div>

@@ Line 78: / Line 78: @@
 ===Get LipidXplorer===
-If you are on Windows you can try the [https://cloud.mpi-cbg.de/index.php/s/Z5slSEynLpiO8LC Single file installer for Windows]
+If you are on Windows you can try the [https://cld.isas.de/s/fDUKI4WJcdYpezQ Single file executable for Windows]
-LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.
+LipidXplorer is published under GPL and available here: [[https://gitlab.isas.de/lifs-public/lipidxplorer LipidXplorer GitLab@ISAS]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.

@@ Line 32: / Line 32: @@
 References:
-[1] Schuhmann, K., et al., Intensity-Independent Noise Filtering in FT MS and FT MS/MS Spectra for Shotgun Lipidomics. Anal Chem, 2017. 89(13): p. 7046-7052.
+# Schuhmann, K., et al., Intensity-Independent Noise Filtering in FT MS and FT MS/MS Spectra for Shotgun Lipidomics. Anal Chem, 2017. 89(13): p. 7046-7052.
-[2] Eggers, L.F. and D. Schwudke, Shotgun Lipidomics Approach for Clinical Samples. Methods Mol Biol, 2018. 1730: p. 163-174.
+# Eggers, L.F. and D. Schwudke, Shotgun Lipidomics Approach for Clinical Samples. Methods Mol Biol, 2018. 1730: p. 163-174.
-[3] Herzog, R., et al., LipidXplorer: a software for consensual cross-platform lipidomics. PLoS One, 2012. 7(1): p. e29851.
+# Herzog, R., et al., LipidXplorer: a software for consensual cross-platform lipidomics. PLoS One, 2012. 7(1): p. e29851.
-[4] Herzog, R., et al., A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol, 2011. 12(1): p. R8.
+# Herzog, R., et al., A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol, 2011. 12(1): p. R8.
-[5] Herzog, R., D. Schwudke, and A. Shevchenko, LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms. Curr Protoc Bioinformatics, 2013. 43: p. 14 12 1-30.
+# Herzog, R., D. Schwudke, and A. Shevchenko, LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms. Curr Protoc Bioinformatics, 2013. 43: p. 14 12 1-30.
 </div>
 <div id="small">
 ====2019-02-12 LipidXplorer available as LIFS Web Application ====
 <p>A web-based version of LipidXplorer is available via the [https://apps.lifs.isas.de/lipidxplorer LIFS web application portal]. Please note that the application is not yet publicly available. If you want to test it, please [https://lifs.isas.de/support.html request access].</p>

@@ Line 98: / Line 98: @@
 [[LX Reference Graessler 2013 | Gaessler J, Bornstein T D, Goel D, Bhalla V P, Lohmann T, Wolf T, Koch M, Qin Y, Licinio J, Wong M-L, Chavakis T, Xu A, Shevchenko A, Schuhmann K, Schwarz P E H, Patel A, Bornstein S R:'''Lipidomic profiling before and after Roux-en-Y gastric bypass in obese patients with diabetes''' ''The Pharmacogenomics Journal 2013 Dec 24'']]
-[[LX Reference Herzog 2013 | Herzog R, Schwudke D, Shevchenko A:'''UNIT 14.12 LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms''' ''Current Protocols in Bioinformatics 2013 Oct 15'']]
+[[LX Reference Herzog 2013 | Herzog R, Schwudke D, Shevchenko A:'''LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms''' ''Current Protocols in Bioinformatics 2013 Oct 15'']]
 </div>