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	<title>LipidXplorer From Command Line - Revision history</title>
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	<updated>2026-04-21T08:19:55Z</updated>
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		<id>https://lifs-tools.org/wiki/index.php?title=LipidXplorer_From_Command_Line&amp;diff=386&amp;oldid=prev</id>
		<title>Jacobo.miranda: Created page with &quot; == LipidXplorer From Command Line ==  One way to run LipidXplorer from the command line is using a LipidXplorer-project file,    # Generate a Project file       In the menu b...&quot;</title>
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		<updated>2020-05-13T17:28:03Z</updated>

		<summary type="html">&lt;p&gt;Created page with &amp;quot; == LipidXplorer From Command Line ==  One way to run LipidXplorer from the command line is using a LipidXplorer-project file,    # Generate a Project file       In the menu b...&amp;quot;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;&lt;br /&gt;
== LipidXplorer From Command Line ==&lt;br /&gt;
&lt;br /&gt;
One way to run LipidXplorer from the command line is using a LipidXplorer-project file,  &lt;br /&gt;
&lt;br /&gt;
# Generate a Project file  &lt;br /&gt;
    In the menu bar go to &amp;#039;&amp;#039;Project&amp;#039;&amp;#039;:  &lt;br /&gt;
    &amp;#039;&amp;#039;Save as&amp;#039;&amp;#039; ... - to store a new project file  &lt;br /&gt;
    &amp;#039;&amp;#039;Save&amp;#039;&amp;#039; - to re-write the current project file&lt;br /&gt;
&lt;br /&gt;
# Edit or update the *.lxp project file&lt;br /&gt;
    the file contains all the configuration setting for LipidXlorerer  &lt;br /&gt;
    including the location of the masterScan and the MFQLs&lt;br /&gt;
&lt;br /&gt;
# Generate the MasterScan with lximport.py&lt;br /&gt;
    run: &amp;#039;&amp;#039;python lximport.py -p &amp;lt;your/project/file.lxp&amp;gt;&amp;#039;&amp;#039;&lt;br /&gt;
    this will generate the masterScan as specified in the project file&lt;br /&gt;
# Generate results with lxrun.py&lt;br /&gt;
    run: &amp;#039;&amp;#039;python lxrun.py -p &amp;lt;your/project/file.lxp&amp;gt;&amp;#039;&amp;#039;&lt;br /&gt;
    this will run the MFQL queries on the masterScan and generate the results&lt;/div&gt;</summary>
		<author><name>Jacobo.miranda</name></author>
	</entry>
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