LIFS LipidXplorer Wiki - Recent changes [en]

LipidXplorer Installation

Nils.hoffmann — Thu, 03 Sep 2026 18:21:20 GMT

B.hossen — Tue, 01 Sep 2026 09:31:01 GMT

Disclaimer

B.hossen — Wed, 26 Aug 2026 12:29:52 GMT

B.hossen — Wed, 26 Aug 2026 12:23:04 GMT

B.hossen — Wed, 26 Aug 2026 12:13:39 GMT

New page

B.hossen — Wed, 26 Aug 2026 11:51:50 GMT

B.hossen uploaded a new version of File:Lx128 run.png

New page

B.hossen — Wed, 26 Aug 2026 11:50:15 GMT

B.hossen — Wed, 26 Aug 2026 11:41:59 GMT

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B.hossen — Wed, 26 Aug 2026 11:34:17 GMT

← Older revision		Revision as of 18:21, 3 September 2026
(One intermediate revision by the same user not shown)
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−	'''Note:''' The current package of LipidXplorer is mainly compatible with 64bit versions of '''Microsoft Windows''' (8,10,11) only. A Linux version ~~is only~~ available ~~from source~~. If you need help, [https://lifs-tools.org/support please contact us].	+	'''Note:''' The current package of LipidXplorer is mainly compatible with 64bit versions of '''Microsoft Windows''' (8,10,11) only. As of version 1.5.0, a Linux and Mac (ARM) version of LipidXplorer are also available. If you need help, [https://lifs-tools.org/support please contact us].
		+
		+	Please check [https://lifs-tools.org/lipidxplorer] for the latest available version and benchmark data.

	=====File conversion=====		=====File conversion=====

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 == Disclaimer  ==
 Despite all efforts that have been put into the development and testing of each release of LipidXplorer, the software might still contain some errors and bugs. Therefore we provide no warranty and assume no responsibility for any consequences caused by the program installation and use. Please use it at your own risk.
 == License  ==

← Older revision		Revision as of 12:29, 26 August 2026
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	The result can be viewed and edited with Excel.		The result can be viewed and edited with Excel.
		+
		+	==Batch mode==
		+
		+	Coming soon ....

	==Alternative import settings file==		==Alternative import settings file==

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 ==== *.mzML ====
-mzXML is a XML (eXtensible Markup Language) based common file format for mass spectrometric data [http://onlinelibrary.wiley.com/doi/10.1002/pmic.200890049/abstract;jsessionid=DFF64D7FEB924A67A29D91EDC1A18261.d01t03?systemMessage=Wiley+Online+Library+will+be+disrupted+on+9+June+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance Deutsch EW (2008). "mzML: A single, unifying data format for mass spectrometer output". Proteomics 8 (14): 2776–7.]. It should replace the commonly used file formats *.mzData and *.mzXML. See [http://en.wikipedia.org/wiki/Mass_spectrometry_data_format Wikipedia on mass spectrometry data formats] for more information.
+mzML is a XML (eXtensible Markup Language) based common file format for mass spectrometric data [http://onlinelibrary.wiley.com/doi/10.1002/pmic.200890049/abstract;jsessionid=DFF64D7FEB924A67A29D91EDC1A18261.d01t03?systemMessage=Wiley+Online+Library+will+be+disrupted+on+9+June+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance Deutsch EW (2008). "mzML: A single, unifying data format for mass spectrometer output". Proteomics 8 (14): 2776–7.]. It should replace the commonly used file formats *.mzData and *.mzXML. See [http://en.wikipedia.org/wiki/Mass_spectrometry_data_format Wikipedia on mass spectrometry data formats] for more information.
 ==== Import of peak lists of MS/MS in *.dta format and MS in *.csv; ====

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 ===Specify the import settings===
-[[Image:lx128_import.png|400px|right|LipidXplorer Import]]
+[[Image:Lx128_import.png|400px|right|LipidXplorer Import]]
 Go to the panel ''Import Settings''.
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 ===Identify lipids===
-[[Image:lx128_run.png|400px|right|LipidXplorer Run panel]]
+[[Image:Lx128_run.png|400px|right|LipidXplorer Run panel]]
 Go to the panel ''Run''.
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 Here we select the MFQL queries we want to use for the identification. Click on 'Add MFQL directory' to select all MFQL files of a folder. Select
-*<tt>LipidXplorer/mfql/negative_mode</tt>.
+*<tt>Spectra_tutorial/MFQL/positive_standards</tt>.
-This is a collection of queries for spectra in negative mode with MS/MS data. Once selected the queries are listed in the query window. You can also drag and drop folder or files there. A double click on of the queries will open a new panel with the content of the query. Here it can be edited.
+Click on 'Add MFQL directory' again and select
 Switch on the isotopic correction by clicking on 'Isotopic Correction MS' and 'Isotopic Correction MS/MS'. With a click on 'Run LipidXplorer' the software starts identification of lipids according to the loaded queries.

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 ===Specify input spectra===
-[[Image:lx128_source_1.png|400px|right|LipidXplorer Import Source panel]]
+[[Image:Lx128_source_1.png|400px|right|LipidXplorer Import Source panel]]
 Open LipidXplorer and you will see the 'Import Source' panel. Click on the 'Browse' button and select the mzML folder in unzipped Spectra tutorial file.